Diversity, Stability, Recursivity, and Rule Generation in Biological System: Intra-inter Dynamics Approach

Basic problems for the construction of a scenario for the Life are discussed. To study the problems in terms of dynamical systems theory, a scheme of intra-inter dynamics is presented. It consists of internal dynamics of a unit, interaction among the units, and the dynamics to change the dynamics itself, for example by replication (and death) of units according to their internal states. Applying the dynamics to cell differentiation, isologous diversification theory is proposed. According to it, orbital instability leads to diversified cell behaviors first. At the next stage, several cell types are formed, first triggered by clustering of oscillations, and then as attracting states of internal dynamics stabilized by the cell-to-cell interaction. At the third stage, the differentiation is determined as a recursive state by cell division. At the last stage, hierarchical differentiation proceeds, with the emergence of stochastic rule for the differentiation to sub-groups, where regulation of the probability for the differentiation provides the diversity and stability of cell society. Relevance of the theory to cell biology is discussed.Comment: 19 pages, Int.J. Mod. Phes. B (in press

Macroscopic chaos in globally coupled maps

We study the coherent dynamics of globally coupled maps showing macroscopic chaos. With this term we indicate the hydrodynamical-like irregular behaviour of some global observables, with typical times much longer than the times related to the evolution of the single (or microscopic) elements of the system. The usual Lyapunov exponent is not able to capture the essential features of this macroscopic phenomenon. Using the recently introduced notion of finite size Lyapunov exponent, we characterize, in a consistent way, these macroscopic behaviours. Basically, at small values of the perturbation we recover the usual (microscopic) Lyapunov exponent, while at larger values a sort of macroscopic Lyapunov exponent emerges, which can be much smaller than the former. A quantitative characterization of the chaotic motion at hydrodynamical level is then possible, even in the absence of the explicit equations for the time evolution of the macroscopic observables.Comment: 24 pages revtex, 9 figures included. Improved version also with 1 figure and some references adde

Dynamics of Coupling Functions in Globally Coupled Maps: Size, Periodicity and Stability of Clusters

It is shown how different globally coupled map systems can be analyzed under a common framework by focusing on the dynamics of their respective global coupling functions. We investigate how the functional form of the coupling determines the formation of clusters in a globally coupled map system and the resulting periodicity of the global interaction. The allowed distributions of elements among periodic clusters is also found to depend on the functional form of the coupling. Through the analogy between globally coupled maps and a single driven map, the clustering behavior of the former systems can be characterized. By using this analogy, the dynamics of periodic clusters in systems displaying a constant global coupling are predicted; and for a particular family of coupling functions, it is shown that the stability condition of these clustered states can straightforwardly be derived.Comment: 12 pp, 5 figs, to appear in PR

Differentiation and Replication of Spots in a Reaction Diffusion System with Many Chemicals

The replication and differentiation of spots in reaction diffusion equations are studied by extending the Gray-Scott model with self-replicating spots to include many degrees of freedom needed to model systems with many chemicals. By examining many possible reaction networks, the behavior of this model is categorized into three types: replication of homogeneous fixed spots, replication of oscillatory spots, and differentiation from `m ultipotent spots'. These multipotent spots either replicate or differentiate into other types of spots with different fixed-point dynamics, and as a result, an inhomogeneous pattern of spots is formed. This differentiation process of spots is analyzed in terms of the loss of chemical diversity and decrease of the local Kolmogorov-Sinai entropy. The relevance of the results to developmental cell biology and stem cells is also discussed.Comment: 8 pages, 12 figures, Submitted to EP

Self-organized and driven phase synchronization in coupled maps

We study the phase synchronization and cluster formation in coupled maps on different networks. We identify two different mechanisms of cluster formation; (a) {\it Self-organized} phase synchronization which leads to clusters with dominant intra-cluster couplings and (b) {\it driven} phase synchronization which leads to clusters with dominant inter-cluster couplings. In the novel driven synchronization the nodes of one cluster are driven by those of the others. We also discuss the dynamical origin of these two mechanisms for small networks with two and three nodes.Comment: 4 pages including 2 figure

Origin of complexity in multicellular organisms

Through extensive studies of dynamical system modeling cellular growth and reproduction, we find evidence that complexity arises in multicellular organisms naturally through evolution. Without any elaborate control mechanism, these systems can exhibit complex pattern formation with spontaneous cell differentiation. Such systems employ a `cooperative' use of resources and maintain a larger growth speed than simple cell systems, which exist in a homogeneous state and behave 'selfishly'. The relevance of the diversity of chemicals and reaction dynamics to the growth of a multicellular organism is demonstrated. Chaotic biochemical dynamics are found to provide the multi-potency of stem cells.Comment: 6 pages, 2 figures, Physical Review Letters, 84, 6130, (2000

Detailed Measurements of Characteristic Profiles of Magnetic Diffuse Scattering in ErB2_2C2_2

Detailed neutron diffraction measurements on a single crystalline ErB$_2$C$_2$ were performed. We observed magnetic diffuse scattering which consists of three components just above the transition temperatures, which is also observed in characteristic antiferroquadrupolar ordering compounds HoB$_2$C$_2$ and TbB$_2$C$_2$. The result of this experiments indicates that the antiferroquadrupolar interaction is not dominantly important as a origin of the magnetic diffuse scattering.Comment: 5 pages, 5 figures, submitted to J. Phys. Soc. Jp

Heterogeneity Induced Order in Globally Coupled Chaotic Systems

Collective behavior is studied in globally coupled maps with distributed nonlinearity. It is shown that the heterogeneity enhances regularity in the collective dynamics. Low-dimensional quasiperiodic motion is often found for the mean-field, even if each element shows chaotic dynamics. The mechanism of this order is due to the formation of an internal bifurcation structure, and the self-consistent dynamics between the structures and the mean-field. Keywords: Globally Coupled Map with heterogeneity, Collective behaviorComment: 11 pages (Revtex) + 4 figures (PostScript,tar+gzip

Coupled Map Modeling for Cloud Dynamics

A coupled map model for cloud dynamics is proposed, which consists of the successive operations of the physical processes; buoyancy, diffusion, viscosity, adiabatic expansion, fall of a droplet by gravity, descent flow dragged by the falling droplet, and advection. Through extensive simulations, the phases corresponding to stratus, cumulus, stratocumulus and cumulonimbus are found, with the change of the ground temperature and the moisture of the air. They are characterized by order parameters such as the cluster number, perimeter-to-area ratio of a cloud, and Kolmogorov-Sinai entropy.Comment: 9 pages, 4 figure, LaTeX, mpeg simulations available at http://aurora.elsip.hokudai.ac.jp